SE0450037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2407
  • Brassica rapa
  • SE0450037
  • PIF/harbinger
  • To11
  • A01:92203-92646
  • TAA
  • AGATTATGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          ---AAATT   TC    TTCAATACCATATTTTTCATCTTTTAACTTTCCACATTATTTTTTACCTTATCATTCAACATATATTTAATTTACACATTACAATGATTTTGTTTGATAAAATTTAACACTCTCGTTTACTAATTAATAATTATTATAATATGTCTAAATTAAATAAATTTAGTCTTTATTTATAGAGAATTTCAAATAATAATT
  AGATTATGTA        GTT  AAGA                                                                                                                                                                                                   
  ||||||||||        |||  ||||                                                                                                                                                                                                   T
  TCTGGTACAT        CAA  CTTA                                                                                                                                                                                                   
AA          CACTTTCA   --    TTTTCTAAGTTGTATTAGTGATATTACTCGTATAACTTTTTATTTAAACTACTACATCTAATAAACCACAACTTTTCTAAGTTGTATAATTTTTTCACTCTTAGTAGCTGTGTACAGTTTAATATCTCTAAAAAGTATAAAAATATAAGGATATAAGAATAATATTTAACTTTTTAAATAAATTAAAATATGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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