Plant MITE

SE0430038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2408
Brassica rapa
SE0430038
hAT
Hat13
A03:22548351-22548543
GGTGAAAG
CAGTGGCGAATGTA

Secondary structure and sequence

TSD TIR

5'

3'

GGTGAAAG           G  G     -  TTTTTGTGGGGGAAAATCTTACATAAACTCAAAAAATGTAACTAGAAATGTTATTTACTAAGAGAA
        CAGTGGCGAAT TA AATTA TT                                                                  
        ||||||||||| || ||||| ||                                                                   
        GTCACCGCTTG AT GAACG GT                                                                  
GAAAGTGG           G  G     A  TCTTCCACCGTTCACAGGGGTGTTTTAAAAGTTTTAAACAATTTATACGAATGTAAAATTAATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430038

GGTGAAAGCAGTGGCGAATGTAGAATTATTTTTTTGTGGGGGAAAATCTTACATAAACTCAAAAAATGTAACTAGAAATGTTATTTACTAAGAGAAAAATAATTAAAATGTAAGCATATTTAACAAATTTTGAAAATTTTGTGGGGACACTTGCCACCTTCTTGAGCAAGGTAGGTTCGCCACTGGGTGAAAG

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