SE0450039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2409
  • Brassica rapa
  • SE0450039
  • PIF/harbinger
  • To5
  • A09:7854506-7854717
  • TAA
  • AGAGCATGATTAATGAGGGGTTCTTAGTGTGGGTTTTTAGCGGAATATAAGAAACTGCCTCTTAACTTTTAACTAAAAAAACTAAGAACCGGCTCTTAAATATCTTATTTAAGAGCCGGTTCTTAGTTTTTTTAGTTAAAAGTTAAGAGACAGTTTCTTATATTCCGCTAAAAACCTCACCCTAAGAACTTTCCATTAATCATGCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               A           T   -                          C                                            T
  AGAGCATGATTAATG GGGGTTCTTAG GTG GGTTTTTAGCGGAATATAAGAAACTG CTCTTAACTTTTAACTAAAAAAACTAAGAACCGGCTCTTAAATA 
  ||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| C
  TCTCGTACTAATTAC TTTCAAGAATC CAC CCAAAAATCGCCTTATATTCTTTGAC GAGAATTGAAAATTGATTTTTTTGATTCTTGGCCGAGAATTTAT 
AA               C           C   T                          A                                            T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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