Plant MITE

SE0450040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2410
Brassica rapa
SE0450040
PIF/harbinger
To12
A03:13986890-13987057
TAA
AGAGCATGATTATTGGGAAGTTCTTAGGGTGAGGTTCTTAACGGAATATAAGATATTTAAGAGCCGGTTCTTAGTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA                  A      A              AC                     -  GG            TA
  AGAGCATGATTATTGGGA GTTCTT GGGTGAGGTTCTTA  GGAATATAAGATATTTAAGAG CC  TTCTTAGTTTTT  
  |||||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||| ||  ||||||||||||  G
  TCTCGTACTAATAACTCT CAAGAA CCCACTCCAAGAAT  CCTTATATTCTATAAATTCTT GG  GAGAATTGAAAA  
AA                  C      C              CT                     A  AA            TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450040

TAAGAGCATGATTATTGGGAAGTTCTTAGGGTGAGGTTCTTAACGGAATATAAGATATTTAAGAGCCGGTTCTTAGTTTTTTAGTTAAAAGTTAAGAGAAGGATTCTTAAATATCTTATATTCCTCTAAGAACCTCACCCCAAGAACCTCTCAATAATCATGCTCTAA

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