SE0430041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2411
  • Brassica rapa
  • SE0430041
  • hAT
  • Hat9
  • A05:3609063-3609276
  • ATTATATC
  • TATATCCAGGGCCGGCTCAAG

Secondary structure and sequence

TSD    TIR
5'



3'
AT    TC           ------------    ATAATA         T    AA   ATT     T   TGT   -      TAATTTAAAAATTTT   CC  -TATCC    TTA
  TATA  CAGGGCCGGCT            CAAG      GTGGGCCCT GGGC  AAA   TTTTT ACA   ATA TATGAA               GGG  CC      TTAA   
  ||||  |||||||||||            ||||      ||||||||| ||||  |||   ||||| |||   ||| ||||||               |||  ||      ||||   T
  ATAT  GTCCCGGCCGA            GTTC      CACCCGGGG CCCG  TTT   AAAAA TGT   TAT ATACTT               CCC  GG      AATT   
CT    TA           ATCCCGTACCCC    -CCCCG         T    GG   GTC     T   TTT   C      ------------TCT   CA  TTAAAA    TTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End