SE0430043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2413
  • Brassica rapa
  • SE0430043
  • hAT
  • Hat14
  • A09:36241349-36242062
  • CTCCCTAC
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCCTAC           -------     ACCCGATATCCGAAGTGGCACTCGAACCCGATCCGAAAAACCCGAACCGAAATCCGAACCGAAGTAGCAAAATACCCGAACGGGTATTGAATAAGGAGAGATTGGATACCCGAACCCGAACGGATAATATCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATATTTCTAGTTTACATCTCTCATTTTATATAAAATATTTATATTGATACTACACATACTTTAAGTTCATATGATATACATACAATTACGGAAAAAATGATTTGCTACTCACTTAAAATGCATGTCAAGTTTTTTATTTCAAAAATT
        TAGGGGTGGGC       ACTTT                                                                                                                                                                                                                                                                                                                                         
        |||||||||||       |||||                                                                                                                                                                                                                                                                                                                                         A
        ATCCCCACCCG       ATGGG                                                                                                                                                                                                                                                                                                                                         
CATCCCTC           CAAGCCC     CAAGCCCAAGCCTAGCCCATAAAGCCTAAAAGCCCATAAAGCCATATCTCCAGATCTTGGGCAAGCCCATAAAGACATGAAGCCCAGCCCAAGCCCATAAAAATCAAGCCTAAGCCAATAAAGCCTAGCCCAAGCCTATAAATCTAAAACTTTTTTTTTTTAATTTTAAAAGTAAAGAGTTCAAATAACATAAATTTTTATATTGAAAATCAATTGATTAAAAAATAAAAATTATCTAACTTACTAATTATCTAAACCTGTATTATAAAATTTTGATTTTTCTGTGATTAAATCAATAAAAATTTTTTTTAAACCAACATTGAAAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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