SE0430044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2414
  • Brassica rapa
  • SE0430044
  • hAT
  • Hat15
  • A03:5898327-5898695
  • CTTATGTT
  • TGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTA    -----CC     ATAAGAACTACATTAAATGAATAGACCAGATTCATATCTCCTAGCCAGGGTCGGGCCTGAGAAATTTTGGCCCAGAAGCAAACAAATTTTTTTTGGCCCATTATCTTTAAAAATCAGAAAAAGTGGCTAAAAAAAAGGTCTAGAGGATCGAACTCTGCACCTCTCATG
    TGTT       TGTAG                                                                                                                                                                        
    ||||       |||||                                                                                                                                                                         
    ACAA       GTACT                                                                                                                                                                        
  AA    AAGCAAA     TAATCGGATGCAAACGGCGAAGTACAAGATATACCGATCCTCGTCCCGGCCCGGACTCATCTCCGTGTATTTCGTACACGAACCCCGGCATGTTCTATATATAAATAATTTCCCGGTTGTTAATACATTTACAATGTAATCAAGATGACCATTCTCGCGACACTGCGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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