SE0450048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2418
  • Brassica rapa
  • SE0450048
  • PIF/harbinger
  • To14
  • A07:8606478-8606765
  • TAA
  • AAGTCCTATTCGTTTGGTTGTCGCATGTTTTGGCGTCAGCGTCAGCAGCGGCGGCAGCGTCAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   TC  A                 T  T      T    GTC       GC    ----        GAGAACAAT G            CA     TAACGCTGT  -       TAC   ATATTAT   G       AGATTTTATC      AGTT
  AAG  CT TTCGTTTGGTTGTCGCA GT TTGGCG CAGC   AGCAGCG  GGCA    GCGTCAAT         T TTGTTCGTTTCG  GACGT         CG CTGACGC   CGC       GTC CGACCGC          TGCGTC    
  |||  || ||||||||||||||||| || |||||| ||||   |||||||  ||||    ||||||||         | ||||||||||||  |||||         || |||||||   |||       ||| |||||||          ||||||     
  TTC  GA AAGCAAACCAACGGCGT CA GGCTGC GTCG   TCGTCGC  TTGT    CGCAGTTG         A AACAAGCAAAGC  CTGCA         GC GACTGCG   GCG       CAG GCTGGCG          ACGCAG    
AA   CC  C                 T  T      C    ---       AA    AATA        --------- G            AA     TCTTTCAAT  A       ---   -------   -       ----------      GACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End