SE0450049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2419
  • Brassica rapa
  • SE0450049
  • PIF/harbinger
  • To15
  • A07:11849209-11849498
  • ATG
  • GGGGGTGATTGGTTAGGTTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATG              A  T    ACTATAAAAAAATTA     GCA   -  TC       TT     --    GC  TAAGTGATGTAAGTTTAAAATTTCCTACAACTAAAAAAATGAGGCTTTAAAAAATAAGATGTTTACAACCATTTTTT
   GGGGGTGATTGGTT GG TGTA               CTTTA   TTT TG  TGTAGGA  TTTGA  TTTA  TT                                                                             
   |||||||||||||| || ||||               |||||   ||| ||  |||||||  |||||  ||||  ||                                                                             G
   CCCCCACTAGCCAA CC ACAT               TTCAC   TGA AT  CGAAATT  AAAAG  GATG  TT                                                                             
GTA              C  T    -------------CC     ---   A  --       --     TA    --  GGAATTTATAATGGTTAGTACGAAATAGAACCAAAAATTTCGATGTTGGTTTTTTAATTTCGATGTCATTTATGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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