SE0450052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2422
  • Brassica rapa
  • SE0450052
  • PIF/harbinger
  • To16
  • A03:27161038-27161323
  • TAA
  • AGACCATCAGCATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C            TAAACCTCTCTTCTCGATTCCCAA     CTATTATTATTATT    -------   CG   --  C -   C ---  TTTAAAAAAAAAAAAAAAAAAAATTAATATTCATCCAATTGCGGGCCGCCGCGTGGCGTGGGGCCCGCAGAA
  AGA CATCAGCATTGG                        TGTTC              TTAA       TTT  TTT  TT T TTT T   TT                                                                        
  ||| ||||||||||||                        |||||              ||||       |||  |||  || | ||| |   ||                                                                         
  TCT GTAGTCGTAACT                        TAATA              TTGT       TGT  GTC  AA G TGT G   TT                                                                        
AA   C            ---------------------TCA     --------------    TTTCAAG   --   AA  - G   - TTT  TTATAATTTTATAAAGTTATCATAACTTGGGCGCAGCGCGCTCCAGCGACCCTTCTGGGCCATAGTATTGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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