Plant MITE

SE0430055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2425
Brassica rapa
SE0430055
hAT
Hat18
A09:31708035-31708258
TCTACAAC
CAGGGGCGAAGGCAG

Secondary structure and sequence

TSD TIR

5'

3'

TCTACAAC           G   ---------    --- GAG  GA   TGCATGTGCACCCATAGAAATAATAAAATTTAAAATTTTAAGCTTAAAACAAGTAGAATTTCACAGGTAA
        CAGGGGCGAAG CAG         ATTA   T   TA  GGG                                                                      
        ||||||||||| |||         ||||   |   ||  |||                                                                      A
        GTCCCCGCTTC GTC         CCGT   C   AC  GTG                                                                      
CAACATCT           G   TTCTAAAAA    ACC ---  --   ATAATTATTTTTTTTGTATCCTCTATTAGCTTGAACTCAATCGCACCCACGTGTTAAACGGAAAATGGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430055

TCTACAACCAGGGGCGAAGGCAGATTATGAGTAGAGGGTGCATGTGCACCCATAGAAATAATAAAATTTAAAATTTTAAGCTTAAAACAAGTAGAATTTCACAGGTAAAATGGTAAAAGGCAAATTGTGCACCCACGCTAACTCAAGTTCGATTATCTCCTATGTTTTTTTTATTAATAGTGCACCCATGCCAAAAATCTTCTGGCTTCGCCCCTGTCTACAAC

Copy Cancel