SE0410057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2427
  • Brassica rapa
  • SE0410057
  • Tc1/Mariner
  • St7
  • A04:1745951-1746200
  • TA
  • TACTCCCTCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
            ACCTTAATG    - C     AGAAAAAAAATTTGTTTCAGAAAGATATATTTTTTGTGTTTTCTATGAAAAATTGTAAACTTTGAAAAAATTAATTAACTTTATTGAATTACTATTG
TACTCCCTCCGT         ACAG A TTTTT                                                                                                 
||||||||||||         |||| | |||||                                                                                                 G
ATGAGGGAGGCA         AGGT T TTCTA                                                                                                 
            ---------    G -     TCTAAAAAATTATAAAAGTATGTATAATTTTTTTGTGTAATTTGATGGTATTATTTACATAATAAAAGACATTAAAAATTAAAAATTATTGAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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