SE0430058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2428
  • Brassica rapa
  • SE0430058
  • hAT
  • Hat19
  • A03:27124762-27124938
  • GTCACTTC
  • CCAGGGGCGGATGTAGGATTAGTAGGGGGCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCACTT                   ---TA   -        AATGATTT      TTATGATTTAGTTTTAGGGTGGAAGCATTCAATAA
       CCAGGGGCGGATGTAGGAT     GTA GGGGGCAC        TTTTCT                                   
       |||||||||||||||||||     ||| ||||||||        ||||||                                   A
       GGTCCCCGCCTGCGTTCTG     CAT CCCCCGTG        GGGGTT                                   
CTTCACT                   TTGTC   G        ----CACG      GACAAAACTTTAAGAGAAACGATTTATGATATTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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