SE0410063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2433
  • Brassica rapa
  • SE0410063
  • Tc1/Mariner
  • St9
  • A01:19028910-19029165
  • TA
  • TACTCCCTCTGTTTTTTTTTAAATGACGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                       T      CTATA     CACACAAATTAAGGCACCTAATACAATATCTGTTCTATCCTCTCCATCAATTAATTATCATCTCTCGTTACACACATTCTTTTTAAAA
TACTCCCTCTGTTTTTTTTTAAA GACGTT     AGTTT                                                                                        
||||||||||||||||||||||| ||||||     |||||                                                                                        A
ATGAGGGAGACAAAAGAAAATTT CTGCAA     TTATA                                                                                        
                       T      -AATC     AACAAAACATAGTAATATCAACTGCAGGAGCCTTTTGTTACGTTCTATATCACTTTATTCTGAAATAAATGGGAATAATATAAAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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