Plant MITE

SE0450066

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2436
Brassica rapa
SE0450066
PIF/harbinger
To14
A02:16170715-16171002
ATA
AGCCCTGTTCGTTTGGTTGCCTCAGGTTTCGGCGTCAGCGGCA

Secondary structure and sequence

TSD TIR

5'

3'

ATA  CC                 T     T      T        -----------          CAGCGGCGGCGGCAGCGTCAATGAGGACAGTTGTTGTTCGTTTCGCAGACGCTGCCGCTGCCGCATATCATATCGCGACCGC
   AG  CTGTTCGTTTGGTTGCC CAGGT TCGGCG CAGCGGCA           GCGGCAGCGG                                                                                  
   ||  ||||||||||||||||| ||||| |||||| ||||||||           ||||||||||                                                                                  A
   TC  GACAAGCAAACCAACGG GTCCA GGCCGC GTCGCCGT           GACGCAGTTG                                                                                  
ATA  CC                 C     T      C        CACAGTTGTAA          AGAACAAGCAAAGCAACTGCGTCCTTGGCCGCCGTCGCCGTCGCAGGCTTGCGACGCAGGACGCTGACTGCGGCTATTTTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450066

ATAAGCCCTGTTCGTTTGGTTGCCTCAGGTTTCGGCGTCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCAGCGTCAATGAGGACAGTTGTTGTTCGTTTCGCAGACGCTGCCGCTGCCGCATATCATATCGCGACCGCAGGTTTTATCGGCGTCAGTCGCAGGACGCAGCGTTCGGACGCTGCCGCTGCCGCCGGTTCCTGCGTCAACGAAACGAACAAGAGTTGACGCAGAATGTTGACACTGCCGCTGCCGCCGGTACCTGCGGCAACCAAACGAACAGCCCTATA

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