Plant MITE

SE0430067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2437
Brassica rapa
SE0430067
hAT
Hat22
A09:27842349-27842618
TTTAGATT
TTTAGATTCAGGGCCGTCT

Secondary structure and sequence

TSD TIR

5'

3'

        TT           A  A  ACGCGCAAGTGGAGCGGTCGAACAGGGCCCCGAAATATAAAAATAAAAAATTTAAAGCTTTTTGGAAATATATAGATAAATTATGGTAAGAAACTTTAAAACTTTAGATAT
  TTTAGA  CAGGGCCGTCT AC GC                                                                                                               
  ||||||  ||||||||||| || ||                                                                                                                
  AGATTT  GTCCCGGCAGA GT TT                                                                                                               
TT      --           -  -  AATTAAACTCCGGGACAAATTTTTTTTATAATTAGCATGTAAAATAGTTCATTAAAATTTTAAATTATTAAAACAGAATAAGAAAATTAATATTCAAGATTTAAATCGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430067

TTTAGATTCAGGGCCGTCTAACAGCACGCGCAAGTGGAGCGGTCGAACAGGGCCCCGAAATATAAAAATAAAAAATTTAAAGCTTTTTGGAAATATATAGATAAATTATGGTAAGAAACTTTAAAACTTTAGATATAATGCTAAATTTAGAACTTATAATTAAAAGAATAAGACAAAATTATTAAATTTTAAAATTACTTGATAAAATGTACGATTAATATTTTTTTTAAACAGGGCCTCAAATTAATTTGAGACGGCCCTGTTTAGATT

Copy Cancel