SE0430074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2444
  • Brassica rapa
  • SE0430074
  • hAT
  • Hat25
  • A01:11584292-11584943
  • GACGCAGG
  • GCAGGTAGGGGTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3'
GAC  AGG            TTTC    T       ---GG  CG    GGGTTCGGT      TGGGTAATTTGGGTTTTATAAAACTCAAACCAATTAAAACCAAAGTAGCTTTGGGTTGGGTTCGGTTTGGGTTTAATTCGGTTCGGTTCAGTTCGGTTTGGTTTAGATTTAGTTTGGTTTACATTATTATGGTCTAGTTTGGTTCGGTGTAGTTTGGGTTGGTTATAAAATATGAAGGCATTAGTTTTATACTTTTATTAAAAAATAATCAACTCATAAACGATAGAGTAAGAATATAAAAACTTATGCTACATGATTTTATATATAAT
   GC   TAGGGGTGGGCA    GGTT AGTTTCG     TT  GTTT         TTGGTT                                                                                                                                                                                                                                                                             
   ||   ||||||||||||    |||| |||||||     ||  ||||         ||||||                                                                                                                                                                                                                                                                             A
   CG   ATCCCCACCCGT    TTTG GGTTTGG     CT  AGCT         GGTTGG                                                                                                                                                                                                                                                                             
GGA  CAG            --TT    -       CTTGG  -T    --------T      TTTGGCTTCAATTTGGCTTGGTTTGGTTTGGCACGAGAAATACATTGGGTTAACCAAGTACAAAATGAGTTGGGCTTGCCAAACCAAACCAAACCCAAATTTGGCTTGGTTTGGCTTGGTTTGGCTATTAGGTTATATATATATCATTTTTATATATACTATATATATATACATAATTGTATAACGTTTAAAATCAATTTCAAAGCAAAAAGTAAAAAAGTATTGAAGGTATAGAAATTTTTTTTAATATTTATGCTAAGTTTATTATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End