SE0430076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2446
  • Brassica rapa
  • SE0430076
  • hAT
  • Hat2
  • A10:6133692-6133914
  • CTTATCAT
  • CAGAGCCGGTCCTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTATCAT                 TTGGT       -CA    AAAAATAATAATGTGGCTACTAAGGTTTGAACTCCTCACCCCTAACAGAAGATAGAGGCGTTTAATCACT
        CAGAGCCGGTCCTTGTT     GAAGCTA   AGCC                                                                      
        |||||||||||||||||     |||||||   ||||                                                                       
        GTCTCGGCCGGGAACGA     CTTCGGT   TTCG                                                                      
TACTATTC                 ----T       TAC    TACTCGAACGCCAAAAATATAATAATTCATTTTATAGCCGGCGGTATAATATGTTTTCATTGAAATCAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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