Plant MITE

SE0430080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2450
Brassica rapa
SE0430080
hAT
Hat26
A09:29529586-29530144
CTCTTCTC
TAGGCCTGGGCGT

Secondary structure and sequence

TSD TIR

5'

3'

CTCTTCTC     C       -       - CCA     --      -    -----      CTCAGATTTTGGATATTTAGGAACTAGAAAAATTGGTACCGATCAGATAATTTAAAATTCCGGTCGGATATGGTTCGATACCTGTCGGATCCGGTTACATCCAAAGTAACCAAAAAATTAACGGATTCGGTACGGTTCTTAGTAGATACCAAACCATTTAATCCGGTAGAATTGAATATAATCCAAAAGAATCAATGATATTCTAAATATCCGAAAACAATAA
        TAGGC TGGGCGT TTGGATA A   GTTCG  GATCCG GATC     GGGTTT                                                                                                                                                                                                                               
        ||||| ||||||| ||||||| |   |||||  |||||| ||||     ||||||                                                                                                                                                                                                                                
        ATCCG ATCCGTA AAAGGGC T   AGGTT  TAGGCT GGCT     TGGGCT                                                                                                                                                                                                                               
CTCTTCTC     A       T       C ---     TC      T    ATTAA      TTTAGCCCAAAGCCTAGTCTAAGCCTATGTTCTTTTATGGACCAACCTATTTCAAATTTTAAACGAGCCTATGGCCTAGCTTTTGCCTATTATGGGCCCTAGGCATACCATAGGCTTTCTAGGCTTAATTTGGGATTAATTCTATTGGGATTATTAGATAATACGCACAAAACTAGAACATCTAATTTGAAACGAAACTAATATAATTTTACCAATACAATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430080

CTCTTCTCTAGGCCTGGGCGTTTGGATAACCAGTTCGGATCCGGATCGGGTTTCTCAGATTTTGGATATTTAGGAACTAGAAAAATTGGTACCGATCAGATAATTTAAAATTCCGGTCGGATATGGTTCGATACCTGTCGGATCCGGTTACATCCAAAGTAACCAAAAAATTAACGGATTCGGTACGGTTCTTAGTAGATACCAAACCATTTAATCCGGTAGAATTGAATATAATCCAAAAGAATCAATGATATTCTAAATATCCGAAAACAATAACATAACATAACCATTTTAATATAATCAAAGCAAAGTTTAATCTACAAGATCAAAACACGCATAATAGATTATTAGGGTTATCTTAATTAGGGTTTAATTCGGATCTTTCGGATACCATACGGATCCCGGGTATTATCCGTTTTCGATCCGGTATCCGAGCAAATTTTAAACTTTATCCAACCAGGTATTTTCTTGTATCCGAATCTGATCCGAAACCCGATTTTCGGGTAATTATCGGTTCGGATCTTTGGATCCGGGAAATATGCCTAAGCCTACTCTTCTC

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