SE0450082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2452
  • Brassica rapa
  • SE0450082
  • PIF/harbinger
  • To2
  • A10:2118749-2118912
  • AGA
  • AGAGCATCTCCAAGGGCACTCTATTTTTTCCTCTATAATTTACACTAAAATAGAGTAACTCTATTATAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
   G         G  C   C   TT   C       A     A                        G   GAACCAT    GC
AGA CATCTCCAA GG ACT TAT  TTT CTCTATA TTTAC CTAAAATAGAGTAACTCTATTATA AGT       TGGA  
||| ||||||||| || ||| |||  ||| ||||||| ||||| |||||||||||||||||||||||| |||       ||||  A
TCT GTAGAGGTT CC TGA ATA  AAA GAGATAT AAGTG GATTTTATCTCATTGAGATAATAT TCA       ACCT  
   G         A  A   A   TT   A       A     A                        G   -------    AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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