SE0450084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2454
  • Brassica rapa
  • SE0450084
  • PIF/harbinger
  • To5
  • A05:13725963-13726175
  • TAA
  • AGAGCATGATTAACCCGGAGTTCTTAGGATGGGGTTCTTAGCGGAAGTTAAGAAACTGTTTCTTAACTTTTAACTAAAAGAACCAAGAACCGGTTCTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G              A         A  G    C                                             CC                 TAA
  AGA CATGATTAACCCGG GTTCTTAGG TG GGTT TTAGCGGAAGTTAAGAAACTGTTTCTTAACTTTTAACTAAAAGAA  AAGAACCGGTTCTTAAA   
  ||| |||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||   G
  TCT GTACTAATTGGGCC CAAGAATCT AC TCAA AATCGCCTTCAATTCTTTGATAAAGAATTGAAAATTGATTTTTTT  TTCTTGGCCAAGAATTT   
AA   G              C         C  A    T                                             AA                 CAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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