SE0450085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2455
  • Brassica rapa
  • SE0450085
  • PIF/harbinger
  • To21
  • A09:13618079-13618352
  • TTT
  • GGGGATGATTGGTAAGTGCTGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT             AA T       CTTTATATTTTT    G     TTTA     -----   ATTTATTT  TGTAGCTTTCTTTGCTGTAGATTTCTAAAGCACTAATTTTTTGCTCTGGAAATAAAGCTCTCTACAGCCATAT
   GGGGATGATTGGT  G GCTGTAG            TGCT TAGAA    ATCTG     TAG        GC                                                                         
   |||||||||||||  | |||||||            |||| |||||    |||||     |||        ||                                                                         T
   CCCCTACTAACCA  C CGACATC            ACGA GACCT    GTTTT     AGA        TG                                                                         
TTT             AC C       -----------T    -     GTCG     AAATC   --------  TCGATATATAGAGTTGGTTAGCTCGAAACGAAAGGAATTTTTTGAGTGTCGTTTTTTTAGAGACGTTTTAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3