Plant MITE

SE0430087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2457
Brassica rapa
SE0430087
hAT
Hat27
A09:25330717-25330874
GTAACCTG
CAGGGGCGGATCCAGCGACAT

Secondary structure and sequence

TSD TIR

5'

3'

GTAACCTG           C   C  -   CACATTATAAAAAAATATTTACATTAAG  -   TTAGATAAATTGTAAGCTAATTATTGAA
        CAGGGGCGGAT CAG GA CAT                            TA CAA                            
        ||||||||||| ||| || |||                            || |||                            G
        GTCCCCGCCTG GTC CT GTA                            CC CCG                            
GTCCAATG           C   T  T   -------------------------TCC  A   TGAACGGGGTATGATTTAAAACATAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430087

GTAACCTGCAGGGGCGGATCCAGCGACATCACATTATAAAAAAATATTTACATTAAGTACAATTAGATAAATTGTAAGCTAATTATTGAAGACAATACAAAATTTAGTATGGGGCAAGTGCCACCCCTATGTTCTCTGCGTCCGCCCCTGGTAACCTG

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