Plant MITE

SE0430088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2458
Brassica rapa
SE0430088
hAT
Hat28
A09:16701948-16702179
TACCCAGA
CAGAGCCGGGCCTAGGCTTTTCAAG

Secondary structure and sequence

TSD TIR

5'

3'

TACC         G   A    TTT    -GCCAC      AAA  GAAAAATGGCTGGAAAAAAAGACTTTGCACACAACAGTATTCGAACCCAGGTCTCCCTCAAAAACTCTGGTACAT
    CAGAGCCGG CCT GGCT   CAAG      AAGCCC   CA                                                                           
    ||||||||| ||| ||||   ||||      ||||||   ||                                                                            
    GTCTCGGCC GGA CCGG   GTTC      TTCGGG   TA                                                                           
   T         G   C    ---    ACTTTC      ---  CGAAGGCCGGCGATAAAATAATTCATTAATTGGCCGGTGTAAAAACAATTTTGACAGATATCAGATCACCAGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430088

TACCCAGAGCCGGGCCTAGGCTTTTCAAGGCCACAAGCCCAAACAGAAAAATGGCTGGAAAAAAAGACTTTGCACACAACAGTATTCGAACCCAGGTCTCCCTCAAAAACTCTGGTACATGATGACCACTAGACTATAGACAGTTTTAACAAAAATGTGGCCGGTTAATTACTTAATAAAATAGCGGCCGGAAGCATGGGCTTCTTTCACTTGGGCCCAGGGCCGGCTCTGT

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