Plant MITE

SE0430089

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2459
Brassica rapa
SE0430089
hAT
Hat29
A04:284686-284930
TTATTGGA
GACAGTGGCGGACCTACAGAGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTG                C   GG  -GAT   --  TG ACCTGACACCCCTTAAATCTCAATACATATAAGTTTGGTTGATAAAATGTTAAGGAATCGGTAGTTCTGCTGGTAAAATGC
      GACAGTGGCGGACCTA AGA  AA    GGG  GT  C                                                                                 
      |||||||||||||||| |||  ||    |||  ||  |                                                                                  
      TTGTCACCGCCTGGGT TCT  TT    TGG  CC  A                                                                                 
AGGTTA                T   AA  AAAA   AC  -- GTTTAAATGTTAATTTTATTTTTTATATTTATTTTTCTCAGTGGTTACTCAAAACTGGAACCAAATTCCCCCAGTCACCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430089

TTATTGGACAGTGGCGGACCTACAGAGGAAGATGGGGTTGCACCTGACACCCCTTAAATCTCAATACATATAAGTTTGGTTGATAAAATGTTAAGGAATCGGTAGTTCTGCTGGTAAAATGCTCCCACTGACCCCCTTAAACCAAGGTCAAAACTCATTGGTGACTCTTTTTATTTATATTTTTTATTTTAATTGTAAATTTGACCCAGGTAAAATTAATCTTTGGGTCCGCCACTGTTATTGGA

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