SE0410091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2461
  • Brassica rapa
  • SE0410091
  • Tc1/Mariner
  • St3
  • A02:21390691-21390953
  • TA
  • TACTCCCTCCGTTTTTTAATATAAGTCGTTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A                     TACACGTGAATTAAAAAATCATTAATTTTTTATATTTTCTAAACAAAAACATCACTAATTATTTACCTAACCACAACTCAACCAATGATAAA
TACTCCCTCCGTTTTTT ATATAAGTCGTTTTAGAATTA                                                                                            
||||||||||||||||| |||||||||||||||||||||                                                                                            A
ATGAGGGAGGCAAAAAA TATATTCAGCAAAATCTCCTT                                                                                            
                 A                     AAAAATACAAGGTTTAATATACTGCAAAAGCCAAAAGATACATTTTAAATAATTGTGAATTACAATATACTGGTTACTATTATATGGAAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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