Plant MITE

SE0430096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2466
Brassica rapa
SE0430096
hAT
Hat32
A03:24177315-24177557
CATGCATG
CATGCATGCAGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

                   TTAGAAATCTTAAGGCTAGAAGCCAAATATGAAAAAATAGCCGAAAATAAAAATTATGTTGGTAGGGTTACTCGAACCCGGTTTTGGGATATCAATACAATG
CATGCATGCAGAGCCAGTC                                                                                                      
|||||||||||||||||||                                                                                                      G
GTACGTACGTCTCGGCCTG                                                                                                      
                   GACCCAGGTTCGTTATCTTCGTTACCGAAGGCCGGCGTTTAATAATAGTTTTTATAGCCGGTGTAAAAAGGTTTTACACAGATATCACGTCACCAACTTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430096

CATGCATGCAGAGCCAGTCTTAGAAATCTTAAGGCTAGAAGCCAAATATGAAAAAATAGCCGAAAATAAAAATTATGTTGGTAGGGTTACTCGAACCCGGTTTTGGGATATCAATACAATGGCTATTCAACCACTGCACTATAGACACATTTTGGAAAAATGTGGCCGATATTTTTGATAATAATTTGCGGCCGGAAGCCATTGCTTCTATTGCTTGGACCCAGGTCCGGCTCTGCATGCATG

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