SE0450105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2475
  • Brassica rapa
  • SE0450105
  • PIF/harbinger
  • To24
  • A08:2571153-2571504
  • TAA
  • AGGGGTTATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGT       ATT  TTGTTGC              A  -       ----     ATCTAGTGTTATTGGTTCTGTGATTTTCAAATCTGTATTAAAATCAGGTGTTATTGGTTTAATGATTCATAAATTCTATATCAAATCAAGTGTTACTCAATCGTACGGATTTACTAATATATTTG
     AGGGGTT   GG       ATTTTAATGGATTT AA AATCCGA    ACTAA                                                                                                                             
     |||||||   ||       |||||||||||||| || |||||||    |||||                                                                                                                              
     TTTCCAA   CC       TCCACAATAACCAA AT TATAAAA    CTAAA                                                                                                                             
TAAAT       -AT  -------              -  A       CTAA     TCTTTAGGTATATCATAAATATTTAGGTTCATTTTATACGTTTAGGCCTCCAAAAAGAAGCCTAAATTCAGAAACATAAAAATTGATTTTTTAGGTTTGTTTAGGTAAGTTTAGGTAATATTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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