Plant MITE

SE0430107

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2477
Brassica rapa
SE0430107
hAT
Hat35
A04:13935506-13935729
GTTGAAAC
GTTGAAACCAGGGGCGAATCTAAACT

Secondary structure and sequence

TSD TIR

5'

3'

   GA             T   A   ------C     -  ATTGGATGCACCAATGATAAAAAGGTAAAAATACAAGCAGAAGAGACTTGAACTTCAAACATTATGGGTGCACA
GTT  AACCAGGGGCGAA CTA ACT       TTTCT GG                                                                          
|||  ||||||||||||| ||| |||       ||||| ||                                                                          G
CAA  TTGGTCCCCGCTT GAT TGA       TACCC CG                                                                          
   AG             C   G   TAACTGA     C  GACACGTGGGTGATTTTATATATATAAATGTTAAAACAAACACTTTAGAGATCCAAATCACCATTTTTGATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430107

GTTGAAACCAGGGGCGAATCTAAACTCTTTCTGGATTGGATGCACCAATGATAAAAAGGTAAAAATACAAGCAGAAGAGACTTGAACTTCAAACATTATGGGTGCACAGAAGTAGTTTTTACCACTAAACCTAGAGATTTCACAAACAAAATTGTAAATATATATATTTTAGTGGGTGCACAGGCCCCCATAGTCAATAGTGTAGCTTCGCCCCTGGTTGAAAC

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