SE0430108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2478
  • Brassica rapa
  • SE0430108
  • hAT
  • Hat36
  • A08:1027542-1028083
  • GTCTATAT
  • ATCTGTGTTTAAATGGCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTAT             -      TC       -    CATGGCGCGAGGCGCACTCAGGCGATGGCTCTGTCGCCATGTACCACCTAGGCGAGGGTGGGTTCCCTAAGGCGCGCGCCATGGGTGCCTTGTCGAGAAGGCGATCATGGCGAAGGCGAGCGTAAGGCGAGATTAATGTAAACCGTATCTAAACCATGTAAGCCTTAATTAGTAATTAAACCTTAGACTTTAAAAAAACTTAACCGGGGAAACTTAAACGCCGAACCCTAGC
      ATCTGTGTTTAAA TGGCGC  GCGTTTT GCGT                                                                                                                                                                                                                                        
      ||||||||||||| ||||||  ||||||| ||||                                                                                                                                                                                                                                         
      TGGACACAAATTT ACCGCG  CCGCGTG TTCC                                                                                                                                                                                                                                        
TATATC             T      TA       G    GCTCTGCACGGCTCGGAACGCGGAGCGCGGTACTGCATTATACCGCGAGCTGAACTTCTTGTAAAATCAATGCAGAACAAAACATAGCCTCTTCTTTAAATCTCTTGTGAATGCGTTACTAACTATATGATTTAAATTTATTCTACATTCGAAATAATATGATCTCTCAAGATTGGAATTCGTTTTTGGAACTCTAGATATAAATACAAAATGCATTGAAGAGAAAATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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