Plant MITE

SE0410113

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2483
Brassica rapa
SE0410113
Tc1/Mariner
St8
Scaffold000111:435491-435755
TA
TACTCCCTCCGTTTGTGAATAAGTGTCA

Secondary structure and sequence

TSD TIR

5'

3'

     C   C    GTG           C    AC   --------------   CACACAGACTAAGAAAGTAGCGGAAATATATGTAAGTCTTTATTAATTACATCTTTCTGGCCAATAGTATTTGAGATAAATAAAAT
TACTC CTC GTTT   AATAAGTGTCA TTTG  ACT              TTT                                                                                      
||||| ||| ||||   ||||||||||| ||||  |||              |||                                                                                       
ATGAG GAG CAAA   TTATTCACAGT AAGA  TCG              TGT                                                                                      
     T   A    GTA           -    --   AAAAAAAAGAACAA   GTTTTTCACAGTGAAATGTTAAGGTTACCTTTAATATGAATGAAAGTCGACCTTTAATTAACGTTTGACGTAACCAAAATATTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410113

TACTCCCTCCGTTTGTGAATAAGTGTCACTTTGACACTTTTCACACAGACTAAGAAAGTAGCGGAAATATATGTAAGTCTTTATTAATTACATCTTTCTGGCCAATAGTATTTGAGATAAATAAAATTATTTATAAAACCAATGCAGTTTGCAATTAATTTCCAGCTGAAAGTAAGTATAATTTCCATTGGAATTGTAAAGTGACACTTTTTGTGTAACAAGAAAAAAAAGCTAGAATGACACTTATTATGAAACAGAGTGAGTA

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