SE0450115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2485
  • Brassica rapa
  • SE0450115
  • PIF/harbinger
  • To2
  • A06:2297353-2297619
  • TAA
  • AGACCATCTCCAATGTATTTCTCTATTTTTACCTCTAAAATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C          G     CTC              A     AAGAATTCTATAA     A    TT          G    ----------                        ATAGAGCAAAATATAGAGGAATGCT
  AGA CATCTCCAAT TATTT   TATTTTTACCTCTA AATAG             TAGAG TGGG  TTACTCCAAT TATT          TCTCTAAAATAGAGATCTCTATAT                         
  ||| |||||||||| |||||   |||||||||||||| |||||             ||||| ||||  |||||||||| ||||          ||||||||||||||||||||||||                         A
  TCT GTAGAGGTTG GTGGA   ATAAAGATGGAGAT TTATC             ATCTC GTTT  AGTGAGGTTG GTAG          GGAGATTTTATCTCTAACGATAAA                         
AA   C          G     --A              A     ---------GTAA     C    -T          G    AGATAAAAAC                        AAAGGAGATAAATATCCCCTTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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