Plant MITE

SE0430124

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2494
Brassica rapa
SE0430124
hAT
Hat41
A08:6018082-6018275
ATAGAACC
C

Secondary structure and sequence

TSD TIR

5'

3'

ATAGAACC      T GAGCCACATTGTGTGAGAGGGGGAAATCTGCCCCCAACAACTTTTCAAAATTTCATATAAAATCATTGAATAAGTTCAATATGC
        CAATGG G                                                                                    
        |||||| |                                                                                    C
        GAGGTA G                                                                                    
      CC      - TCACCGCCTACCTCTCGTAGTAAAATAACCCCCGTATACATTTTAACCGTTACCTAATCTTCATGTAAAAGATTTTTGTTACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430124

ATAGAACCCAATGGTGGAGCCACATTGTGTGAGAGGGGGAAATCTGCCCCCAACAACTTTTCAAAATTTCATATAAAATCATTGAATAAGTTCAATATGCCCCCATTGTTTTTAGAAAATGTACTTCTAATCCATTGCCAATTTTACATATGCCCCCAATAAAATGATGCTCTCCATCCGCCACTGATGGAGCC

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