SE0450128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2498
  • Brassica rapa
  • SE0450128
  • PIF/harbinger
  • To8
  • A05:3417583-3417880
  • TGA
  • AGAGCATGAGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG      T      CA      --   CTTTGGGGTTCACCTTCTTAATTTTTTATTATTAAAGTTTTTCTTTTTTTCATTTTGATTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAATTGACCAATCGCGGGCCGCCACGTGTCGTGG
  AGAGCA GAGCAT  GTGAAC  CCC                                                                                                                          
  |||||| ||||||  ||||||  |||                                                                                                                          G
  TCTCGT CTCGTA  TCTCCA  TTC                                                                                                                          
AG      T      -A      AG   TCCCTCCAAGTGTGCAAAATGCTCTTTTTTTTATAATTTTTTTCGTTTTCACTACTTGAGTGGGGAAGAGTGGAGAAGACGTACTATGGGAGAGAAGATTTCAAGTAGTGACATCGCGCCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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