Plant MITE

SE0430129

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2499
Brassica rapa
SE0430129
hAT
Hat42
A08:1803683-1804412
GTAGTGAA
TAGTGAATAGGGGTGGGC

Secondary structure and sequence

TSD TIR

5'

3'

 G  G  AA           AAAAAAAC   ACCGAATCGATCGAATCGAACCGACTGAACCAAAACCGATTCGAACCAAACCAAAGTCCATTTCAAATCTTTCAGTTGAGATTTTTCCAACCCGAACGGTTCAATTCAGTTCGGTTTAAACCGAACCGAACCGATAAACCGAAGTGTTTTTATAGTTATTTAAATTAAAAATATTAGTAATATCAAGATATTAAAATCCTAATATTAAGCCCACGTAATTTCCTTTTGCACGAAGGAAATCCTAATATAATTTGATTTCCATGACACTTCGTCTAACTTTTGTAATATTCGTCATTAAGCCCACATAATTTCCATGTTAATTTTTTTCAATAGCGTATA
  TA TG  TAGGGGTGGGC        CGA                                                                                                                                                                                                                                                                                                                                                   
  || ||  |||||||||||        |||                                                                                                                                                                                                                                                                                                                                                    
  GT AT  ATCCCCACCCG        TGA                                                                                                                                                                                                                                                                                                                                                   
AA  G  -G           --------   AGCCAATAAAATAGCCAAGCCAAGCTCAAGCCAAGCCAAATCAACCAAGCCAAGATCTTAAAAAGGTCGACTTCATTTGGTATCAATCAAACCAAACCTAGCTAAAGCCAAGTCAATACAAGCCAAGCCAAATATAAGCCAAACCGAACATAAGCTAAGCCAAGCCAAGCCAAATTAGCCTAAAGAGAATCAAATAAATAACATGTTCTTTAGTACAAAATTATGTATGTACATACCAACAGTACTTTATTAGCGCAACCTGTATTAGTTTTTAATTCATACATTTAATTTAAGTTAAATTAATCTGAACCGAATCCAAAATTAAAATCCCAAATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430129

GTAGTGAATAGGGGTGGGCAAAAAAACCGAACCGAATCGATCGAATCGAACCGACTGAACCAAAACCGATTCGAACCAAACCAAAGTCCATTTCAAATCTTTCAGTTGAGATTTTTCCAACCCGAACGGTTCAATTCAGTTCGGTTTAAACCGAACCGAACCGATAAACCGAAGTGTTTTTATAGTTATTTAAATTAAAAATATTAGTAATATCAAGATATTAAAATCCTAATATTAAGCCCACGTAATTTCCTTTTGCACGAAGGAAATCCTAATATAATTTGATTTCCATGACACTTCGTCTAACTTTTGTAATATTCGTCATTAAGCCCACATAATTTCCATGTTAATTTTTTTCAATAGCGTATACTTTTAAACCCTAAAATTAAAACCTAAGCCAAGTCTAATTAAATTGAATTTAATTTACATACTTAATTTTTGATTATGTCCAACGCGATTATTTCATGACAACCATACATGTATGTATTAAAACATGATTTCTTGTACAATAAATAAACTAAGAGAAATCCGATTAAACCGAACCGAACCGAATCGAATACAAGCCAAACCGAATATAAACCGAACCGAACATAACTGAACCGAAATCGATCCAAACCAAACTAACTATGGTTTACTTCAGCTGGAAAAATTCTAGAACCGAACCAACTAAACCGAACCGAACTCGAACCGAACCGATAAAATAACCGAAGTGCCCACCCCTAGTAGTGAA

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