SE0410134

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2504
  • Brassica rapa
  • SE0410134
  • Tc1/Mariner
  • St2
  • A10:12824653-12824924
  • TA
  • TACTCCCTCTGTTTTTTAAAGATGGATGTTCTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                    AAATA     -- TT  AAA  --     T  TTCATGTTTTCAAAGCATATTTTGTCAATTAATAATGAAAAATTGTGTGTTTCAAAAATATTAATTACATTTC
TACTCCCTCTGTTTTTTAAAGATGGATGTTCTAGGA     TTTTG  T  CT   AG  ATGTA TT                                                                         
||||||||||||||||||||||||||||||||||||     |||||  |  ||   ||  ||||| ||                                                                          
ATGAGGGAGACAAAAAATTTCTACTTACAAGATCCT     GTGTG  T  AA   TT  TTGGT TA                                                                         
                                    -AAAA     AA --  ---  CT     A  ATTTTGAATCAATAATTACGTATCAAAAAACATTGAAATATAAAAAATATAAAAATTTGGTTATCCTAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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