SE0410135

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2505
  • Brassica rapa
  • SE0410135
  • Tc1/Mariner
  • St13
  • A02:9397772-9398033
  • TA
  • TACTTCATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
     CA   -     TAAAAGATCCATGTTATAGCTTTTTTACACTTATTAAAAAAACATATAAAATTATATTTTTCAATATATTGTTTTTCTTAATTAACTATTCCCAATAACTTTTAACCAATGAGAT
TACTT  TCT GATCT                                                                                                                   
|||||  ||| |||||                                                                                                                   T
ATGAG  AGA AAAGA                                                                                                                   
     AG   T     TTTCATATATACAAAATTTTTTTTTTAACAAAGTTTTTCTATGTAAAAAAATATAAAAGTTATGTAATTAATTAATTTTTAACATGAAAATTTTTTTATGTTAGCACAAATTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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