Plant MITE

SE0410144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2514
Brassica rapa
SE0410144
Tc1/Mariner
St2
A05:3294207-3294456
TA
TACTCCCTCCGTTCCCTAAAATTACATATTATAGA

Secondary structure and sequence

TSD TIR

5'

3'

     C   C     C              A    -    AATCTTGTTTCAAAAAAATCTATTTTTTACATTTTCAATACATATTTTATTAATTAATTGCAAACTTCAAAAAACTTAATTGCAC
TACTC CTC GTTCC TAAAATTACATATT TAGA GAAA                                                                                     
||||| ||| ||||| |||||||||||||| |||| ||||                                                                                     T
ATGAG GAG CAAGG ATTTTAATGTATAA ATTT AAAA                                                                                     
     A   A     A              G    A    GTGTGTAAAATTATTTTGTATAATTTAAATATATAAAAAAACACAAATAGAAAAAAGTATTAAAATTTGGTTATTTTTAAGTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410144

TACTCCCTCCGTTCCCTAAAATTACATATTATAGAGAAAAATCTTGTTTCAAAAAAATCTATTTTTTACATTTTCAATACATATTTTATTAATTAATTGCAAACTTCAAAAAACTTAATTGCACTAGTTGAATTTTTATTGGTTTAAAATTATGAAAAAAGATAAACACAAAAAAATATATAAATTTAATATGTTTTATTAAAATGTGTGAAAAATTTAGAATATGTAATTTTAAGGAACAGAGAGAGTA

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