SE0430149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2519
  • Brassica rapa
  • SE0430149
  • hAT
  • Hat48
  • A04:2006500-2006692
  • GTAATAAT
  • ATCAGGGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAATA     G           AGAAATATTTTGTTGGGGGCATAGCTAAAATTACTTATAGATTTAGGGATAAATTTGCTATAAACACAGGGGC
      ATCAG GGCGGATGTAG                                                                         
      ||||| |||||||||||                                                                         A
      TGGTC CCGCCTCGGTG                                                                         
TAATAA     A           CAATACATTGTTCCCCCGTTGACGGGGGTCATGAAAAAGTTTTAGGACACATTTTGTACTCATTAAAATCAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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