SE0450150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2520
  • Brassica rapa
  • SE0450150
  • PIF/harbinger
  • To5
  • A01:27309667-27309880
  • TAA
  • AGAGCATGATTATCGGGGGTTCTTAAGGTGGAGTTCTTAGCGGAATATAACAACCCGTCTCTTAACTTTTAACTAAAAAAGCTAAGAACCGGCTCTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ---C                     C              C                                     C   C       TAA
  AGAGCATGATTAT    GGGGGTTCTTAAGGTGGAGTT TTAGCGGAATATAA AACCCGTCTCTTAACTTTTAACTAAAAAAGCTAAGAA CGG TCTTAAA   
  |||||||||||||    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||   G
  TCTCGTACTAATA    TCCCCAAGAATTCCATCTCAA AATCGCCTTATATT TTGGGCAGAGAATTGAAAATTGATTTTTTTGATTCTT GCC AGAATTT   
AA             ACCC                     A              C                                     A   A       TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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