SE0430164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2534
  • Brassica rapa
  • SE0430164
  • hAT
  • Hat14
  • A04:12167424-12168018
  • TCGTCAAC
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TCGTCAAC                   -----     ---   - GGTTCGGATCGGGTATTTCGGATTTTCGGGTATTTCGGTATAGAGGTGTAGAACCCGTTCGGGTATTTCTGTACTTCGGGTCGGGTTCGGGTATTTTTAGTTCGGTTTCGGTTATTTCGGATCGGGTTCGGATATTAATAGATTTGGATATAACATTTTCAAACTAAAAAGACATTAATTTGGTTATTGTTTTTAAATTTTGGATGTAACTTTTTGTTAATTGTTGAAATAAAAAGTTTGACATGTATTTTAAGTGC
        TAGGGGTGGGCGTTCGGGT     ACCCG   TTC G                                                                                                                                                                                                                                                                 
        |||||||||||||||||||     |||||   ||| |                                                                                                                                                                                                                                                                  
        ATCCCCACCCGTGAAATGG     AGGCT   CCG G                                                                                                                                                                                                                                                                 
CAACTGCT                   GCTTT     TCA   T GGCTTGGGCTAGGCTTTTTGGACTTGGCTTCATCGTTTTATAGGCTTGCCCATAATTTAATCCTCTCTAACCTATAGGCTTTGGCTTGCCCATTATAGGCTTGGGCTTACCTATAGGCTTCTATTGGCTTGTATACATATTAATTGGAATATAAAAATTAAATGTAGAAAGTAAAATATATTTTATAAATATAACTATGATGTGTATGAAATTTAAGTATACTATATGTATGTTAATGCATCTTCTACTAAACGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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