SE0450166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2536
  • Brassica rapa
  • SE0450166
  • PIF/harbinger
  • To22
  • Scaffold000111:584846-585108
  • TTA
  • AGGGTGTGACTGGTGACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         C         ---------------------         ----     --  C -------------  A        AATATTCCTTAAACATTTTACCATTCATGAGGAATAAGTTTTCCTTTTCATTCCTCTTCATT
  AGGGTGTGA TGGTGACCA                     AGAGAATGA    AGAGG  AA A             AT TGTTCCTT                                                              
  ||||||||| |||||||||                     |||||||||    |||||  || |             || ||||||||                                                              C
  TCCCACACT ACCATTGGT                     TATCTTTTA    CTTAT  TT A             AC TATTTCTT                                                              
AT         A         AGTATCCTTGTTATCCTTGCC         CTTA     CC  - TTAAAAAATCCTT  -        ACTAACAAGGAATAGTTTTAACTACTCCTTAACTAAATAAGATATTAAGAGATGTTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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