Plant MITE

SE0430167

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2537
Brassica rapa
SE0430167
hAT
Hat19
A05:21587564-21587746
GTTTTAAG
TTTTAAGCAGGGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

G  TT  G          -----CG      ----------- ACGG  AC     CACGTGCCCCCAACTGTTTTGAAATTCTCTTTGCTAAATACTATAA
 TT  AA CAGGGGCGGA       CAAGAC           A    GT  GGGGG                                              
 ||  || ||||||||||       ||||||           |    ||  |||||                                              G
 AA  TT GTCCCCGCCT       ACGATT           G    TG  TTACT                                              
G  TT  G          ACATCCT      AATCATCCCCC ----  --     AAAAAAAGTAATACTAAATCAAAATCCCACCTTCGTAAGTTATTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430167

GTTTTAAGCAGGGGCGGACGCAAGACAACGGGTACGGGGGCACGTGCCCCCAACTGTTTTGAAATTCTCTTTGCTAAATACTATAAGGTTTATTGAATGCTTCCACCCTAAAACTAAATCATAATGAAAAAAATCATTGTGCCCCCTACTAATTAGCATCCTACATCCGCCCCTGGTTTTAAG

Copy Cancel