Plant MITE

SE0450168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2538
Brassica rapa
SE0450168
PIF/harbinger
To1
A08:14005077-14005252
TTA
AGAGCATCTCCATCCTCACTCCATAATTTGCTATAAAATGGTCTGAAAAATGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

TT  A      C                      A        TC  AA          GTTAAAA         ---GT    A     TA
  AG GCATCT CATCCTCACTCCATAATTTGCT TAAAATGG  TG  AAATGGAGTA       AACAAAAAA     GATT CTCCA  
  || |||||| |||||||||||||||||||||| ||||||||  ||  ||||||||||       |||||||||     |||| |||||   
  TC CGTAGA GTAGGGGTGAGGTATTAAATGA GTTTTATC  AC  TTTATCTCAT       TTGTTTTTT     TTAA GAGGT  
AT  C      A                      A        TC  CC          -----AC         ATTTT    A     AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450168

TTAGAGCATCTCCATCCTCACTCCATAATTTGCTATAAAATGGTCTGAAAAATGGAGTAGTTAAAAAACAAAAAAGTGATTACTCCATAAATGGAGAAATTTTTTATTTTTTGTTCATACTCTATTTCCCACTCTATTTTGAAGTAAATTATGGAGTGGGGATGAAGATGCCCTTA

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