SE0450169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2539
  • Brassica rapa
  • SE0450169
  • PIF/harbinger
  • To3
  • A09:16566675-16566839
  • TTA
  • AGGCTTCGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            TTACG      ------C  --  CCGCACCGCAGTTAACAGTAACAAAAATCTTTACAAATATTATATATCTA
  AGGCTTCGAATG     AACTGC       CT  GC                                                  
  ||||||||||||     ||||||       ||  ||                                                   
  TCCGAGGCTTAC     TTGACG       CG  AC                                                  
AT            ---CA      CCAAACT  CC  GCCTTGTTCGCCAAATTGACGCCACGCCAAAATTGTCAATATTTTTGCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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