Plant MITE

SE0450170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2540
Brassica rapa
SE0450170
PIF/harbinger
To6
A03:21948083-21948390
TAA
AGACCATCTCCAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   C         CCCACCTCTATTTTTA                           AA                                                           A                 ATT G       --C       AA
  AGA CATCTCCAA                TCTCTATATTTTCCTCTAAAATAGAGA  CTCTATTATAGAGGTGGATTTGCTCCAATGTATGCCTCTATAATAGAGTTCCTCTATTT TAGGGGAAAATATAGAG   T CTATTTT   ATCTCTA  
  ||| |||||||||                |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||   |||||||   
  TCT GTAGAGGTT                AGAGATATAAAAGGAGATTTTATCTCT  GAGATAATATCTCCACCTAAACGAGGTTACATACGGAGATATTATCTCAAGGAGATAAA ATCTCCTTTTATATCTC   A GATGAAA   TGGAGAT  
AA   C         ----------ACATAC                           -A                                                           -                 CTT G       AAA       AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450170

TAAGACCATCTCCAACCCACCTCTATTTTTATCTCTATATTTTCCTCTAAAATAGAGAAACTCTATTATAGAGGTGGATTTGCTCCAATGTATGCCTCTATAATAGAGTTCCTCTATTTATAGGGGAAAATATAGAGATTTGCTATTTTCATCTCTAAATATAGAGGTAAAAAAGTAGGATTCCTCTATATTTTCCTCTAAAATAGAGGAACTCTATTATAGAGGCATACATTGGAGCAAATCCACCTCTATAATAGAGATCTCTATTTTAGAGGAAAATATAGAGACATACATTGGAGATGCTCTAA

Copy Cancel