SE0450173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2543
  • Brassica rapa
  • SE0450173
  • PIF/harbinger
  • To32
  • A04:9025717-9025907
  • TAA
  • AGGCCATCATTATCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C  T         TAG  GAA   -- AA  --  TTAAAATAAAAAAAGTAAAGGACGCAAGAGATATCAAAGGACGAAGGACGAGCTGGGACG
  AGG CA CATTATCGC   GA   TTT  T  GT  CC                                                            
  ||| || |||||||||   ||   |||  |  ||  ||                                                             
  TCC GT GTAATAGCG   CA   GGG  G  AC  GG                                                            
AA   C  T         TTG  ---   TC --  CA  AATTCCCGTCCCCTGGGTGTTTTTGTGGTCCTAGCTCCCCTTTTCAGCAATATATTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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