Plant MITE

SE0430174

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2544
Brassica rapa
SE0430174
hAT
Hat52
A05:18480144-18480733
CTGCGAAT
TGCGAATTAGGGCTGGGACTTCTGAT

Secondary structure and sequence

TSD TIR

5'

3'

  C    AAT    GC     C  C    ATT     T GATTCTGATAGAATCCGATCGGGTCCGGGTTTTTTGGATAAATGAATTCTATACCCAATGGGTATTTAGTAGATTTCGGTTCGGGTTTCGGATCGGATACTATTGGTTTCGGGTCGGTTCCAGATACCCGTTTTTTATTTGAATTATATGAATATTTGCAAAATAAAATAATTATATACCAGTTTTTATTTATTTTTTTATTTTTTAAGGAAAAGTAAATATAAATCGTATATATATTAGTTATATGTATTAAATACAA
   TGCG   TAGG  TGGGA TT TGAT   CGGTT G                                                                                                                                                                                                                                                                   
   ||||   ||||  ||||| || ||||   ||||| |                                                                                                                                                                                                                                                                    
   GCGT   ATCC  ACCCT AA ACTA   ATAGG T                                                                                                                                                                                                                                                                   
TAA    --C    GA     -  A    AAA     - ATTGACTTATAGGCTTGGCCTTGGTTAGGCTTTACCTGGCCAAGCCAAGTCAAAGCCAGGATCCGATAAATAGGCTACCCATAATCACAATTAATAGGTACCCATAGCCAAGGCAAGGCCAAAAATAGGCTTTGGCTTGCCCATGGGCAAATTGGGCTTAAGATACGAATTTTTTGTATTAAAACATAGAAGGCTTCTAGCTTGGGCCCAACCTATCCGTTTCGTTGTTTACATTATGGTGATCTGATCAAGTTGAAGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430174

CTGCGAATTAGGGCTGGGACTTCTGATATTCGGTTTGGATTCTGATAGAATCCGATCGGGTCCGGGTTTTTTGGATAAATGAATTCTATACCCAATGGGTATTTAGTAGATTTCGGTTCGGGTTTCGGATCGGATACTATTGGTTTCGGGTCGGTTCCAGATACCCGTTTTTTATTTGAATTATATGAATATTTGCAAAATAAAATAATTATATACCAGTTTTTATTTATTTTTTTATTTTTTAAGGAAAAGTAAATATAAATCGTATATATATTAGTTATATGTATTAAATACAACGAAGTTGAACTAGTCTAGTGGTATTACATTTGTTGCTTTGCCTATCCAACCCGGGTTCGATCTTCGGAAGATACAAAATTATGTTTTTTAAGCATAGAATTCGGGTTAAACGGGTACCCGTTCGGTTTCGGATAAAAACCGGAACGGAACCGATACCCATGGATAATTAACACTAATACCCATCGGATAAATAGCCTAGGACCGAAACTGAACCGAACCGGTCCATTTCGGATTGGTTCCGGTTCGGATATTCAGTTATGGATAAAAATCAAAATCCCAAGCCTACTGCGAAT

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