SE0430176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2546
  • Brassica rapa
  • SE0430176
  • hAT
  • Hat54
  • A05:15408412-15409149
  • GTAAGAGC
  • GCTAGGGCTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAGA       C      --   TGGTAAAACCGAACCGAAATAGACAATATGTTTTGGTTTTGGTATATACCATATAAACCGAATGAATATAATTTTATAAAAACTGTAAGATTTGGATATAGTTTGGTATATAACCGACTAAACCAAATAAACCGAACAAAACCGATTAAAAGTAGAAACATGTAAATATGTATCTATTTTATAACAATACATGAAAATCTATTTGTTACATAAGTTAAATTTGTGTTAATAACTATTACCATAATTTTATAGTAATAAAGAACTTTAGTTTGTAAAACACTTGAACTATAATTAAATAACAATACATCGCAATTCAGACATCTTATTTTCTAAGTAGGGGTTATT
      GCTAGGG TGTTTA  ATA                                                                                                                                                                                                                                                                                                                                                         
      ||||||| ||||||  |||                                                                                                                                                                                                                                                                                                                                                          
      TGATCCC ACAAGT  GGC                                                                                                                                                                                                                                                                                                                                                         
CGAGAA       C      TA   CTATAGCCAAGCCAAAGCCAAGTCAAAAAAAACCAAAAGCCATAAAGCCAATCATTTTATATTGATGGTAAAATTTAGGTATAAATGAAGCCAAGCCAAATATATGGCGGCCAAAAGCCAAATAAGACAAAATATGGTTTTTTGTATTAATAAATCAAACTCTAGTATAATATACTTAAAATCTCAGTATAATAGTTGTGTTAGTAAAAAGGTGAGAAGGTATAAATCACAAGTAATTTCAGTATTAAAAAGTTAACTTTTAAAAGGTAATTAATAACAGGTAATTCTTAGTTGCCTAAAGAATTTAGGATCTTCTTAAGAGTTTAGGTAATTTTAGTATCTTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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