SE0410177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2547
  • Brassica rapa
  • SE0410177
  • Tc1/Mariner
  • St12
  • A06:2368451-2368691
  • TA
  • TACTCCCTCTGTTTTTAATTGTAGGTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              TTA             CT      AAAAGTTTGTTTCATAATATAAGTAGTTTACATATTTCAATGTACTTTTTCATTTATTGGATAATGTGTGACCAATGAAATAA
TACTCCCTCTGTTT   ATTGTAGGTAGTT  AGCAAA                                                                                   
||||||||||||||   |||||||||||||  ||||||                                                                                   A
ATGAGGGAGACAAA   TAACATTCATCAA  AACGAA                                                                                   
              TAA             --      TTTTCGTGTGTATAAATCTTTCAACAATAAAAAAATTTGTTTAGTAAATTAGTTAATTAAGTTGGTTAATCTTTTATAAATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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